MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3151505242460001
cnr4.02668473688988
efc0.5942667023034703
fber89.30513000488281
fwhmavg3.80637
fwhmx3.58201
fwhmy4.10099
fwhmz3.73611
icvscsf0.185666619604416
icvsgm0.4770565465607862
icvswm0.33727683383479784
inumed1.0794744491577148
inurange0.3710852503776554
qi10.0
qi20.0008918405246663159
rpvecsf27.813916472656434
rpvegm12.277024364528762
rpvewm18.97485414235706
sizex180
sizey256
sizez256
snrcsf2.29183412336738
snrgm11.085857520957314
snrtotal10.09864123339815
snrwm16.918232055869755
snrdcsf11.778196518439414
snrdgm27.78153799558466
snrdtotal27.295677158755023
snrdwm42.32729696224099
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.441560853038271
summarybgmad15.47791576385498
summarybgmean56.27249526977539
summarybgmedian54.28047180175781
summarybgn2744658.0
summarybgp0533.00993747711182
summarybgp9586.64974403381346
summarybgstdv16.865428924560547
summarycsfk3.8672150186242753
summarycsfmad114.2756118774414
summarycsfmean298.6155700683594
summarycsfmedian278.265625
summarycsfn14662.0
summarycsfp05138.29228591918945
summarycsfp95518.1863708496093
summarycsfstdv121.4119873046875
summarygmk0.424740616148529
summarygmmad55.488182067871094
summarygmmean657.6155395507812
summarygmmedian656.3523559570312
summarygmn43747.0
summarygmp05562.5901000976562
summarygmp95757.9896484375
summarygmstdv59.20560073852539
summarywmk0.8912230219640236
summarywmmad52.81349563598633
summarywmmean998.5294189453125
summarywmmedian1000.0029907226562
summarywmn170004.0
summarywmp05895.9311218261719
summarywmp951091.2890319824219
summarywmstdv59.10783386230469
tpmoverlapcsf0.21390490233898163
tpmoverlapgm0.535510778427124
tpmoverlapwm0.533884584903717
wm2max0.520548672946565

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum20abd1a0ea557c5b8d37f9077b45249d
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.