MRIQC: individual T1w report

Summary

Subject ID: 029_ExercisePre.
Date and time: 2018-05-06, 20:33.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3151505242460001
cnr			4.02668473688988
efc			0.5942667023034703
fber			89.30513000488281
fwhm	avg		3.80637
fwhm	x		3.58201
fwhm	y		4.10099
fwhm	z		3.73611
icvs	csf		0.185666619604416
icvs	gm		0.4770565465607862
icvs	wm		0.33727683383479784
inu	med		1.0794744491577148
inu	range		0.3710852503776554
qi	1		0.0
qi	2		0.0008918405246663159
rpve	csf		27.813916472656434
rpve	gm		12.277024364528762
rpve	wm		18.97485414235706
size	x		180
size	y		256
size	z		256
snr	csf		2.29183412336738
snr	gm		11.085857520957314
snr	total		10.09864123339815
snr	wm		16.918232055869755
snrd	csf		11.778196518439414
snrd	gm		27.78153799558466
snrd	total		27.295677158755023
snrd	wm		42.32729696224099
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.441560853038271
summary	bg	mad	15.47791576385498
summary	bg	mean	56.27249526977539
summary	bg	median	54.28047180175781
summary	bg	n	2744658.0
summary	bg	p05	33.00993747711182
summary	bg	p95	86.64974403381346
summary	bg	stdv	16.865428924560547
summary	csf	k	3.8672150186242753
summary	csf	mad	114.2756118774414
summary	csf	mean	298.6155700683594
summary	csf	median	278.265625
summary	csf	n	14662.0
summary	csf	p05	138.29228591918945
summary	csf	p95	518.1863708496093
summary	csf	stdv	121.4119873046875
summary	gm	k	0.424740616148529
summary	gm	mad	55.488182067871094
summary	gm	mean	657.6155395507812
summary	gm	median	656.3523559570312
summary	gm	n	43747.0
summary	gm	p05	562.5901000976562
summary	gm	p95	757.9896484375
summary	gm	stdv	59.20560073852539
summary	wm	k	0.8912230219640236
summary	wm	mad	52.81349563598633
summary	wm	mean	998.5294189453125
summary	wm	median	1000.0029907226562
summary	wm	n	170004.0
summary	wm	p05	895.9311218261719
summary	wm	p95	1091.2890319824219
summary	wm	stdv	59.10783386230469
tpm	overlap	csf	0.21390490233898163
tpm	overlap	gm	0.535510778427124
tpm	overlap	wm	0.533884584903717
wm2max			0.520548672946565

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	20abd1a0ea557c5b8d37f9077b45249d
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.